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Listar por autor "Krasnogor, Natalio"
Mostrando ítems 1-15 de 15
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Artículo
A computational study of liposome logic: towards cellular computing from the bottom up
Smaldon, James; Romero Campero, Francisco José; Fernández Trillo, Francisco; Gheorghe, Marian; Alexander, Cameron; Krasnogor, Natalio (Springer, 2010)In this paper we propose a new bottom-up approach to cellular computing, in which computational chemical processes are ...
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Ponencia
A Multiscale Modeling Framework Based on P Systems
Romero Campero, Francisco José; Twycross, Jamie; Cao, Hongqing; Blakes, Jonathan; Krasnogor, Natalio (Springer, 2008)Cellular systems present a highly complex organization at different scales including the molecular, cellular and colony ...
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Ponencia
A systems analysis of the AHL Quorum Sensing system in Pseudomonas aeruginosa
Romero Campero, Francisco José; Blakes, Jonathan; Camara, Miguel; Krasnogor, Natalio (European Science Foundation (ESF), 2008) -
Ponencia
An Approach to the Engineering of Cellular Models Based on P Systems
Romero Campero, Francisco José; Krasnogor, Natalio (Springer, 2009)Living cells assembled into colonies or tissues communicate using complex systems. These systems consist in the interaction ...
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Artículo
Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features
Bacardit, Jaume; Widera, Pawel; Márquez Chamorro, Alfonso Eduardo; Divina, Federico; Aguilar Ruiz, Jesús Salvador; Krasnogor, Natalio (Oxford University Press, 2012)Motivation: The prediction of a protein’s contact map has become in recent years, a crucial stepping stone for the ...
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Ponencia
Conventional Verification for Unconventional Computing: a Genetic XOR Gate Example
Konur, Savas; Gheorgue, Marian; Dragomir, Ciprian; Ipate, Florentin; Krasnogor, Natalio (Fénix Editora, 2014)As unconventional computation matures and non-standard programming frameworks are demonstrated, the need for formal veri ...
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Artículo
Evolving cell models for systems and synthetic biology
Cao, Hongqing; Romero Campero, Francisco José; Heeb, Stephan; Cámara, Miguel; Krasnogor, Natalio (Springer, 2010)This paper proposes a new methodology for the automated design of cell models for systems and synthetic biology. Our ...
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Capítulo de Libro
Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology
Blakes, Jonathan; Twycross, Jamie; Konur, Savas; Romero Campero, Francisco José; Krasnogor, Natalio; Gheorghe, Marian (Springer, 2014)This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel ...
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Capítulo de Libro
Learning Robust Dynamic Networks in Prokaryotes by Gene Expression Networks Iterative Explorer (GENIE)
Harari, Óscar; Rubio Escudero, Cristina; Traverso, Patricio; Santos, Marcelo; Zwir, Igor (Springer, 2008)Genetic and genomic approaches have been used successfully to assign genes to distinct regulatory networks, but the ...
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Artículo
Modular Assembly of Cell Systems Biology Models Using P Systems
Romero Campero, Francisco José; Twycross, Jamie; Bennett, Malcolm; Cámara, Miguel; Krasnogor, Natalio (World Scientific, 2009)In this paper we propose an extension of the modelling framework based on P systems which explicitly includes modularity. ...
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Capítulo de Libro
On P Systems as a Modelling Tool for Biological Systems
Bernardini, Francesco; Gheorghe, Marian; Krasnogor, Natalio; Muniyandi, Ravie C.; Pérez Jiménez, Mario de Jesús; Romero Campero, Francisco José (Springer, 2006)We introduce a variant of P systems where rules have associated a real number providing a measure for the “intrinsic ...
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Ponencia
On P Systems with Bounded Parallelism
Bernardini, Francesco; Romero Campero, Francisco José; Gheorghe, Marian; Pérez Jiménez, Mario de Jesús; Margenstern, Maurice; Verlan, Sergey; Krasnogor, Natalio (IEEE Computer Society, 2005)A framework that describes the evolution of P systems with bounded parallelism is de ned by introducing basic formal ...
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Ponencia
Structure and parameter estimation for cell systems biology models
Romero Campero, Francisco José; Cao, Hongqing; Cámara, Miguel; Krasnogor, Natalio (ACM Digital Library, 2008)In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our ...
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Artículo
The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology
Blakes, Jonathan; Twycross, Jamie; Romero Campero, Francisco José; Krasnogor, Natalio (Oxford Academic, 2011)The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization ...
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Ponencia
Towards a P Systems Pseudomonas Quorum Sensing Model
Bianco, Luca; Pescini, Dario; Siepmann, Peter; Krasnogor, Natalio; Romero Campero, Francisco José; Gheorghe, Marian (Springer, 2006)Pseudomonas aeruginosa is an opportunistic bacterium that exploits quorum sensing communication to synchronize individuals ...